The included bash scripts are named in analogy to the figures in the manuscript to which they correspond, i.e., FIG2_3.sh, FIG4.sh, FIG5.sh, FIG6.sh. See folder tree structure in Figs. S2, S3, S4, S5, S6, S7 and S8 below.
They can be executed as follows:
Here, <X> represents the number of processes to use for performing the computation. Usually, replacing <X> by is a good choice, if your system has more than four CPU cores. The above scripts will also automatically create the visualizations of the data corresponding to Figs. 2 to 6. in the manuscript.